I have read some threads about this but I am still confused. I started my model with what I assume were the system axes. I think they point north, east, and up. Somewhere along the way I changed them for some groups, so I had several different axes, but all orthogonal. At one point I had green going up. I think I fixed most of those problems. Then I added a geo-location and wanted to orient my house on the map. So I selected everything in my model and spun it around so it dropped onto my house on the map. All of my axes are now orthogonal to my house model except section planes which continue to be square to the original system axes. It doesn’t really create a problem, it just looks funny when I add sections. Did I do something naughty by rotating my house, or is that just the ways it is with sections.
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