Scenes NOT keeping my layer setup

I have setup scenes to display layers on or off. My viewports display fine in Layout until I close everything. Once I return to my drawings, its like the dwarfs and elves went into my Sketchup file and messed up with my scenes manager, therefore ruining my layout sheets
I have to point out that this is only happening now that I am using the Trimble Connect Collaboration Manager. Never before has this happened to me.